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    <div class="hresume">
      <div class="contact vcard section">
        <div class="head">
          <div class="fn n" id="j">
            <span class="given-name">Paul</span>
            <span class="additional-name">R.</span>
            <span class="family-name">Saxman</span>
          </div>
          
          <span class="title">Software Engineer</span> -
          <span class="title">Systems Architect</span> - 
          <span class="title">BioMedical Informaticist</span>
        </div>
        
        <div class="std_contact">
          <div class="adr">
            <div class="street-address">2485 Lancashire Drive, Apt. #1B</div>
            <span class="locality">Ann Arbor</span>,
            <span class="region">MI</span>
            <span class="postal-code">48105</span>
            <span class="country-name">USA</span>
          </div>
          <div class="tel">
            <span class="value">+1 734 709 8790</span> (<span class="type">mobile</span>)
          </div>
        </div>
        
        <div class="inet_contact">
          <div><a class="email" href="mailto:saxman@umich.edu">saxman@umich.edu</a></div>
          <div><a class="url" href="http://resume.thebreach.org">http://resume.thebreach.org</a></div>
          <div style="display: none"><a class="url" href="http://www.linkedin.com/profile?key=15039460" rel="nofollow"><img src="http://www.linkedin.com/favicon.ico" alt="LinkedIn" /> LinkedIn Profile</a></div>
          <div style="display: none"><a class="url" href="http://www.facebook.com/profile.php?id=2255271" rel="nofollow"><img src="http://www.facebook.com/favicon.ico" alt="Facebook" /> Facebook Profile</a></div>
        </div>
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      <hr />
      
      <div class="section">
        <h2>Profile</h2>
        <div class="summary">Experienced software engineer and biomedical informaticist with particular expertise in systems integration with web services and database-backed, rich web applications. Critical thinker with a proven ability to elucidate and analyze business requirements and deliver innovative solutions that are reliable, scalable, and maintainable. Strong collaborator and communicator with a history of success as both an independent developer and a member of a team. Ardent technical lead with effective mentorship skills and demonstrated ability in guiding teams to operating efficiently in concert. Inquisitive researcher with strong desire to develop and explore ideas and technologies. Social humanist with a passion for the happiness and well-being of those around him.</div>
      </div>
      
      <div class="section">
        <h2>Professional Experience</h2>
        <div class="vcalendar">
          <div class="experience vevent vcard">
            <div class="htitle">
              <ul>
                <li class="title">Technical Lead</li>
                <li class="title">Systems Architect</li>
                <li class="title last">Information Architect</li>
              </ul>
              <div>
                <span class="org"><a href="http://www.michr.umich.edu" rel="nofollow">Michigan Institute for Clinical and Health Research</a></span>,
                <span class="location"><a href="http://www.umich.edu" rel="nofollow">University of Michigan</a></span>
              </div>
            </div>
            <div class="date_duration">
              <abbr class="dtstart" title="2005-02-01">February 2005</abbr> - <abbr class="dtend">Present</abbr>
            </div>
            <ul>
              <li class="description">
                <div>Architected and led the development of a standards-based query and messaging platform for securely and semantically integrating HIPAA regulated protected health information and clinical research data across multiple universities and U-M Health System departments.</div>
                <ul class="skill_list">
                  <li class="skill">Java</li>
                  <li class="skill">Spring Framework</li>
                  <li class="skill">Hibernate</li>
                  <li class="skill">Apache CXF</li>
                  <li class="skill">JAXB</li>
                  <li class="skill">JPA/EJB 3.0</li>
                  <li class="skill">SOA</li>
                  <li class="skill">SOAP</li>
                  <li class="skill">REST</li>
                  <li class="skill">SSL Auth.</li>
                  <li class="skill">Ontologies</li>
                  <li class="skill">i2b2</li>
                  <li class="skill">HL7 v3 CDA</li>
                  <li class="skill">SNOMED CT</li>
                  <li class="skill last">LOINC</li>
                </ul>
              </li>
              
              <li class="description">
                <div>Led the evaluation, enhancement, and deployment of an enterprise portal designed to support research collaboration, community outreach, and information dissemination. Directed the development of a Semantic Web-based guided search application for accelerating research by assisting scientists in identifying and locating research resources.</div>
                <ul class="skill_list">
                  <li class="skill">Java</li>
                  <li class="skill">JSP</li>
                  <li class="skill">JSTL</li>
                  <li class="skill">XHTML</li>
                  <li class="skill">CSS</li>
                  <li class="skill">JavaScript</li>
                  <li class="skill">jQuery</li>
                  <li class="skill">OWL</li>
                  <li class="skill">RDF</li>
                  <li class="skill">Liferay Enterprise Portal</li>
                  <li class="skill">Portlets (JSR-168/286)</li>
                  <li class="skill">WSRP</li>
                  <li class="skill">Biositemaps</li>
                  <li class="skill last">Biomedical Resources Ontology</li>
                </ul>
              </li>
              
              <li class="description">
              	<div>Supported various research-based software development initiatives, including the creation of complex network analysis and visualization tools, databases, and data mining and analysis algorithms. Employed complex systems and information analysis techniques to help understand global properties of multi-scale (genomic to phenotypic) biomedical systems.</div>
                <ul class="skill_list">
                  <li class="skill">Network Science</li>
                  <li class="skill">Information Science</li>
                  <li class="skill">Data Mining</li>
                  <li class="skill">MicroArray Analysis</li>
                  <li class="skill">R</li>
                  <li class="skill">Flex/ActionScript</li>
                  <li class="skill">Java</li>
                  <li class="skill last">Python</li>
                </ul>
              </li>
              
              <li class="description">
                <div>Established and managed workplace agile software development processes, standards and infrastructure, including iterative/agile project planning, source revision control, build automation, continuous integration, test-driven development, collaborative documentation, et cetera.</div>
                <ul class="skill_list">
                  <li class="skill">Agile methodology</li>
                  <li class="skill">Test-driven development</li>
                  <li class="skill">JUnit</li>
                  <li class="skill">EasyMock</li>
                  <li class="skill">Subversion</li>
                  <li class="skill">Maven 2</li>
                  <li class="skill">Hudson</li>
                  <li class="skill">JIRA</li>
                  <li class="skill last">Confluence</li>
                </ul> 
              </li>
            </ul>
          </div>
          
          <div class="experience vevent vcard">
            <div class="htitle">
              <ul>
                <li class="title">Systems Architect</li>
                <li class="title">Consultant</li>
                <li class="title last">Sole Proprietor</li>
              </ul>
              <div>
                <span class="org"><a href="" rel="nofollow">Anima Scientia L.L.C.</a></span>
              </div>
            </div>
            <div class="date_duration">
              <abbr class="dtstart" title="2005-06-01">June 2005</abbr> - <abbr class="dtend">Present</abbr>
            </div>
			<ul>
              <li class="description">
              	<div>Designed and implemented a rich, Web-based Internet application for exploring high resolution heat-map representations of distance matrices derived from large sets of genetic sequences.</div>
                <ul class="skill_list">
                  <li class="skill">Java</li>
                  <li class="skill">XHTML</li>
                  <li class="skill">CSS</li>
                  <li class="skill">JavaScript</li>
                  <li class="skill">AJAX</li>
                  <li class="skill">REST</li>
                  <li class="skill">Apache CXF</li>
                  <li class="skill last">JAXB</li>
                </ul> 
              </li>
              
              <li class="description">
              	<div>Advised bioinformatics development team in the effective use of emerging web service technologies, the design of rich, Web-based user interfaces, and the utility and execution of agile software development methodologies.</div>
                <ul class="skill_list">
                  <li class="skill">Agile methodology</li>
                  <li class="skill">SOA</li>
                  <li class="skill">SOAP</li>
                  <li class="skill">REST</li>
                  <li class="skill">JAXB</li>
                  <li class="skill">Hibernate</li>
                  <li class="skill last">Eclipse IDE</li>
                </ul>
              </li>
              
			  <li class="description">
              	<div>Developed a social networking application that allows researchers to share and discover high quality scientific journal articles. Researched and implemented a tool for recommending research articles based on a user's personal reference library.</div>
                <ul class="skill_list">
                  <li class="skill">FaceBook API</li>
                  <li class="skill">CiteULike</li>
                  <li class="skill">Java</li>
                  <li class="skill">RSS</li>
                  <li class="skill">Bayesian document classification</li>
                  <li class="skill last">Lucene</li>
                </ul>
              </li>
            </ul>
          </div>
          
          <div class="experience vevent vcard">
            <div class="htitle">
              <ul>
                <li class="title">Senior Programmer/Analyst</li>
                <li class="title last">Systems Architect/Administrator</li>
              </ul>
              <div>
                <span class="org"><a href="http://www.engin.umich.edu/caen" rel="nofollow">Computer Aided Engineering Network</a></span>,
                <span class="location"><a href="http://www.umich.edu" rel="nofollow">University of Michigan</a></span>
              </div>
            </div>
            <div class="date_duration">
              <abbr class="dtstart" title="2001-12-01">December 2001</abbr> - <abbr class="dtend" title="2005-01-01">January 2005</abbr>
            </div>
			<ul>
              <li class="description">
              	<div>Architected, deployed, and maintained the Web server infrastructure for the U-M College of Engineering. These facilities included multiple Web and application servers, a load balancer, a content management system, an enterprise portal, a Google Search Appliance, et cetera.</div>
                <ul class="skill_list">
                  <li class="skill">Apache HTTPD Server</li>
                  <li class="skill">Apache Tomcat</li>
                  <li class="skill">Squid</li>
                  <li class="skill">Zope/Plone</li>
                  <li class="skill">Google Search Applicance</li>
                  <li class="skill">LDAP</li>
                  <li class="skill last">Kerberos</li>
                </ul>
              </li>
              
              <li class="description">
              	<div>Built and maintained a variety of custom Web-based systems for real-time monitoring and reporting of lab computer availability, sharing a Google Search Appliance between multiple university departments with disparate web infrastructures, conducting the election of faculty members to department cabinet positions, and managing and searching faculty curriculum vitae.</div>
                <ul class="skill_list">
                  <li class="skill">Java</li>
                  <li class="skill">XHTML</li>
                  <li class="skill">CSS</li>
                  <li class="skill">JavaScript</li>
                  <li class="skill">JSP</li>
                  <li class="skill">JSTL</li>
                  <li class="skill">Hibernate</li>
                  <li class="skill">SQL</li>
                  <li class="skill">Python</li>
                  <li class="skill last">Zope/Plone</li>
                </ul>
              </li>
              
			  <li class="description">
              	<div>Guided the technology and software architecture decisions of several independent student and professional software development teams, each working to develop Web-based tools to support the operations of the college. These systems were deployed on shared college server infrastructure and centrally maintained by the college web applications team.</div>
              </li>
              
              <li class="description">
                <div>
                  Co-developed a highly secure, Web-based single sign-on solution that was employed to protect numerous applications across the university that contain sensitive student and human resource information.
                  <a href="http://www.umich.edu/~umweb/software/cosign/"><img src="images/linkout.gif" alt="Open New Windows" /></a>
                </div>
                <ul class="skill_list">
                  <li class="skill">Java</li>
                  <li class="skill">SSL Auth.</li>
                  <li class="skill">JAAS</li>
                  <li class="skill">Servlet Filters</li>
                  <li class="skill last">Kerberos</li>
                </ul>
              </li>
            </ul>
          </div>
          
          <div class="experience vevent vcard">
            <div class="htitle">
              <ul>
                <li class="title">Senior Programmer/Analyst</li>
                <li class="title last">Systems Administrator</li>
              </ul>
              <div>
                <span class="org"><a href="http://www.cme.msu.edu" rel="nofollow">Center for Microbial Ecology</a></span>,
                <span class="location"><a href="http://www.msu.edu" rel="nofollow">Michigan State University</a></span>
              </div>
            </div>
            <div class="date_duration">
              <abbr class="dtstart" title="1997-08-01">August 1997</abbr> - <abbr class="dtend" title="2001-12-01">December 2001</abbr>
            </div>
			<ul>
              <li class="description">
              	<div>Designed and developed various Web-based bioinformatics systems for aggregating, storing, analyzing, and disseminating genetic information. These systems included genetic sequence alignment and analysis web sites and tools (<i>Ribosomal Database Project</i>; <i>TRFLP Analysis Tool</i>), microbial strain knowledge management and search systems (<i>rrnDB</i>; <i>Biodegradative Strain Database</i>), and information management tools to support inter-insitutional, collaborative curation of digitized genetic laboratory assets (<i>MicrobeArrayDB</i>; <i>Shewanella Federation</i>).</div>
                <ul class="skill_list">
                  <li class="skill">Java</li>
                  <li class="skill">JSP</li>
                  <li class="skill">HTML</li>
                  <li class="skill">CSS</li>
                  <li class="skill">JavaScript</li>
                  <li class="skill">XML</li>
                  <li class="skill">DTD</li>
                  <li class="skill">XSD</li>
                  <li class="skill">SQL</li>
                  <li class="skill">EJB</li>
                  <li class="skill">Swing</li>
                  <li class="skill last">C++</li>
                </ul>
              </li>
              <li class="description">
                Built and supported the scientific computing infrastructure used to support the biological and bioinformatics research conducted at the Center for Microbial Ecology. Managed a high performance computing grid, numerous research workstations, and multiple web application servers.
              </li>
            </ul>
          </div>
        </div>
      </div>
      
      <hr />
      
      <div class="section">
        <h2>Core Competencies</h2>
        <div class="tags">
          <ul class="skills">
            <li class="skill_set">
              <div>Strategies</div>
              <ul class="skill_list">
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Agile_software_development">Agile software development</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Test-driven_development">Test-driven development</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Model-driven_architecture">Model-driven architecture</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Domain_driven_design">Domain-driven design</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Service-oriented_architecture">Service-oriented architecture</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Rapid_application_development">Rapid application development</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Build_automation">Build automation</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Continuous_integration">Continuous integration</a></li>
              </ul>
            </li>
            <li class="skill_set">
              <div>Technologies</div>
              <ul class="skill_list">
                <li><a class="skill" target="_blank" rel="tag" href="http://java.sun.com">Java</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://www.w3c.org">(X)HTML and CSS</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/JavaScript">JavaScript and AJAX</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://www.w3c.org">XML, XSD, XPath and XSLT</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://www.springframework.org">Spring Framework</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="https://www.hibernate.org/397.html">Hibernate and JPA/EJB 3.0</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Relational_model">Relational Modeling and SQL</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://www.adobe.com/products/flex/">Flex and ActionScript</a></li>
              </ul>
            </li>
            <li class="skill_set">
              <div>Knowledge</div>
              <ul class="skill_list">
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Bioinformatics">Bioinformatics</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Network_theory">Network theory</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Agent_based_model">Agent-based modeling</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Information_science">Information science</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Health_informatics">Health informatics</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Complex_systems">Complex systems</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Human_genetics">Human genetics</a></li>
                <li><a class="skill" target="_blank" rel="tag" href="http://en.wikipedia.org/wiki/Natural_language_processing">Natural language processing</a></li>
              </ul>
            </li>
          </ul>              
        </div>
      </div>
      
      <hr />
      
      <div class="section education">
        <h2>Education</h2>
        <div class="vcalendar">
          <div class="education vevent vcard">
            <div class="htitle">
              <div class="summary">Master of Science, <a href="http://www.bioinformatics.med.umich.edu/" rel="nofollow">Bioinformatics</a></div>
              <div class="org">
                <a href="http://www.umich.edu" rel="nofollow">University of Michigan</a>
              </div>
            </div>
            <div class="date_duration">
              <abbr class="dtstart" title="2006-01-01">January 2006</abbr> - <abbr class="dtend" title="2008-12-01">December 2008</abbr>
            </div>
          </div>
          
          <div class="education vevent vcard">
            <div class="htitle">
              <div class="summary">Bachelor of Science, <a href="http://www.cse.msu.edu" rel="nofollow">Computer Science/Engineering</a> (dual degree)</div>
              <div class="org">
                <a href="http://www.msu.edu" rel="nofollow">Michigan State University</a>
              </div>
            </div>
            <div class="date_duration">
              <abbr class="dtstart" title="1994-08-01">August 1994</abbr> - <abbr class="dtend" title="1999-05-01">May 1999</abbr>
            </div>
          </div>
        </div>
      </div>
      
      <hr />
      
      <div class="section pubs">
        <h2>Selected Publications</h2>
        <ol class="publications">
          <li class="publication">
            <div class="author">Mirel BR, Wright Z, Tenenbaum JD, <b>Saxman P</b>, Smith KA.</div>
            <div class="article"><cite>User Requirements for Exploring a Resource Inventory for Clinical Research.</cite></div>
            <div class="journal">AMIA Annual Symposium. 2010 (in review).</div>
          </li>
          
          <li class="publication">
            <div class="author">Bhavnani SK, Bellalla G, Ganesan A, Krishna R, <b>Saxman P</b>, Scott C, Silveira M, Given C.</div>
            <div class="article"><cite>Network Analysis of Cancer Patients and Symptoms: Implications for Symptom Management and Treatment.</cite></div>
            <div class="journal">AMIA Annual Symposium Proceedings. 2009 (in press).</div>
          </li>
          
          <li class="publication">
            <div class="authors">Boyd AD, <b>Saxman P</b>, Hunscher DA, Smith KA, Morris TD, Kaston M, Bayoff F, Rogers B, et al.</div>
            <div class="article"><cite>The University of Michigan Honest Broker: A Web-based Service for Clinical and Translational Research and Practice.</cite></div>
            <div class="journal">Journal of the American Medical Informatics Association. 2009 Nov-Dec;16(6):784-91.</div>
            <a href="http://www.ncbi.nlm.nih.gov/pubmed/19717803"><img src="images/linkout.gif" alt="Open New Windows" /></a>
          </li>
          
          <li class="publication">
            <div class="authors">Bhavnani SK, Eichinger F, Martini S, <b>Saxman P</b>, Jagadish HV, Kretzler1 M.</div>
            <div class="article"><cite>Network Analysis of Genes Regulated in Renal Diseases: Implications for a Molecular-Based Classification.</cite></div>
            <div class="journal">BMC Bioinformatics. 2009 Sep 17;10 Suppl 9:S3.</div>
            <a href="http://www.ncbi.nlm.nih.gov/pubmed/19761573"><img src="images/linkout.gif" alt="Open New Windows" /></a>
          </li>
          
          <!--
          <li class="publication">
            <div class="authors">Bhavnani SK, Eichinger F, Martini S, <b>Saxman P</b>, Kretzler M.</div>
            <div class="article"><cite>Network Analysis of Genes Regulated in Renal Diseases: Implications for a Molecular-Based Classification.</cite></div>
            <div class="journal">AMIA Summit on Translational Bioinformatics Proceedings. 2009 (in press).</div>
          </li>
          -->
          
          <li class="publication">
            <div class="authors">Patel R, Hanratty M, Johnson J, <b>Saxman P</b>, Shah A, Zheng K.</div>
            <div class="article"><cite>Casepedia: a web 2.0 case repository enabling collaborative learning.</cite></div>
            <div class="journal">AMIA Annual Symposium Proceedings. 2008 Nov 6:1085.</div>
            <a href="http://www.ncbi.nlm.nih.gov/pubmed/18999234"><img src="images/linkout.gif" alt="Open New Windows" /></a>
          </li>
          
          <li class="publication">
            <div class="authors">Bhavnani SK, Ganesan A, Scott C, Weber C, <b>Saxman P.</b></div>
            <div class="article"><cite>A novel system for rapidly identifying toxic chemicals.</cite></div>
            <div class="journal">AMIA Annual Symposium Proceedings. 2008 Nov 6:878.</div>
            <a href="http://www.ncbi.nlm.nih.gov/pubmed/18999084"><img src="images/linkout.gif" alt="Open New Windows" /></a>
          </li>
          
          <!--
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            <div class="authors">Bhavnani SK, Ganesan A, Weber C, Banas S, <b>Saxman P</b>.</div>
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            <div class="authors">Maidak BL, Cole JR, Lilburn TG, Parker CT, <b>Saxman PR</b>, et al.</div>
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